Preprints
Chakravarty, S., Delgado-Sallent, C., Kane, G. A., Xia, H., Do, Q., Senne, R. A., & Scott, B. (2024). A cross-species framework for investigating perceptual evidence accumulation. bioRxiv. https://doi.org/10.1101/2024.04.17.589945
Monasterio, A., Lienkaemper, C., Coello, S., Ocker, G. K., Ramirez, S., & Scott, B. B. (2024). CA1 engram cell dynamics before and after learning. bioRxiv. https://doi.org/10.1101/2024.04.16.589790
Affan, R.O., Bright, I.M., Pemberton, L., Cruzado, N.A., Scott, B.B. and Howard M. O. (2024) Ramping dynamics in the frontal cortex unfold over multiple timescales during motor planning. bioRxiv. https://doi.org/10.1101/2024.02.05.578819
Publications
2024
Kane, G.A., Senne, R.A. and Scott, B.B. (2024) Rat movements reflect internal decision dynamics in an evidence accumulation task. Journal of Neurophysiology. https://doi.org/10.1152/jn.00181.2024 PDF
Affan, R.O., and Scott B.B. (2024) High-resolution tracking of internal model formation using automated live-in training. Conference on Cognitive Computational Neuroscience. PDF
Rich, P.D., Thiberge Y.S., Scott B.B., Guo C., Tervo D.G.R., Brody C.D., Karpova, A.Y., Daw, N. and Tank D.W. (2024) Magnetic voluntary head-fixation in transgenic rats enables lifetime imaging of hippocampal neurons. Nature Communications. https://doi.org/10.1038/s41467-024-48505-9
Shvedov, N.R., Analoui, S., Dafalias, T., Bedell, B.L., Gardner, T.J., and Scott, B.B. (2024) In vivo imaging in transgenic songbirds reveals superdiffusive neuron migration in the adult brain. Cell Reports. https://doi.org/10.1101/2023.07.14.548876
Previewed in: Migratory neurons in adult songbirds spread their wings. Sorrells, S.F. Cell Reports. https://doi.org/10.1016/j.celrep.2024.113848
Spotlight in: Window into the songbird brain reveals superdiffusive migration of adult-born neurons. Pytte, C.L. TINS. https://doi.org/10.1016/j.tins.2024.04.001
2023
Do, Q., Hasselmo M.E., Scott, B.B. (2023) Generalization in an Evidence Accumulation Task. Conference on Cognitive Computational Neuroscience. https://doi.org/10.32470/CCN.2023.1410-0
Do, Q., Li, Y., Kane, G.A., McGuire, J.T. and Scott, B.B. (2023) Assessing evidence accumulation and rule learning in humans with an online game. Journal of Neurophysiology. https://doi.org/10.1152/jn.00124.2022
2022
Kim, S.J., Slocum A.H. and Scott B.B. (2022) A miniature kinematic coupling device for head-restraint in mice. Journal of Neuroscience Methods. https://doi.org/10.1016/j.jneumeth.2022.109549
Charles A.S., Cermak N., Affan R., Scott B.B. , Schiller J. and Mishne G. (2022) GraFT: Graph filtered temporal dictionary learning for functional neural imaging. IEEE Transactions on Image Processing. https://doi.org/10.1109/TIP.2022.3171414
2018
Scott B.B., Thiberge Y.S., Guo C., Tervo D.G.R., Brody C.D., Karpova, A.Y. and Tank D.W. (2018) Imaging cortical dynamics in GCaMP transgenic rats with a head-mounted widefield macroscope. Neuron. https://doi.org/10.1016/j.neuron.2018.09.050 - Video Abstract
Before 2018
Scott B.B., Constantinople C.M., Akrami A., Hanks T., Brody C.D. and Tank D.W. (2017) Fronto-parietal cortical circuits encode accumulated evidence with a diversity of timescales. Neuron. https://doi.org/10.1016/j.neuron.2017.06.013 - Video Abstract
Scott B.B., Constantinople C.M., Erlich J.C., Tank D.W. and Brody C.D. (2015) Sources of noise during accumulation of evidence in unrestrained and voluntarily head-restrained rats. eLife. https://doi.org/10.7554/eLife.11308
Scott B.B., Brody C.D. and Tank D.W. (2013) Cellular resolution functional imaging in behaving rats using voluntary head restraint. Neuron. https://doi.org/10.1016/j.neuron.2013.08.002
Scott B.B., Gardner T., Ji N., Fee M.S. and Lois C. (2012) Wandering neuronal migration in the postnatal vertebrate forebrain. Journal of Neuroscience. https://doi.org/10.1523/JNEUROSCI.2145-11.2012 - Video
Agate R.J., Scott B.B., Haripal B., Lois C., and Nottebohm F. (2009) Transgenic songbirds offer an opportunity to develop a genetic model for vocal learning. Proceedings of the National Academy of Sciences. USA. https://doi.org/10.1073/pnas.0909139106
Scott B.B. and Lois C. (2007) Developmental origin and identity of song system neurons born during vocal learning in songbirds. Journal of Comparative Neurology. https://doi.org/10.1002/cne.21296 (PDF)
Scott B.B. and Lois C. (2006) Generation of transgenic birds with replication-decient lentiviruses. Nature Protocols. https://doi.org/10.1038/nprot.2006.187
Scott B.B. and Lois, C. (2005) Generation of tissue-specific transgenic birds. Proceedings of the National Academy of Sciences. USA. https://doi.org/10.1073/pnas.0508437102
Reviews, Opinions, Perspectives
Scott, B.B. (2024) Computational and systems neuroscience needs development. Transmitter. https://doi.org/10.53053/TRPW5375
Kim, S.J., Affan, R. O., Frostig, H., Scott, B.B., and Alexander, A.S. (2023) Advances in cellular resolution microscopy for brain imaging in rats. Neurophotonics. https://doi.org/10.1117/1.NPh.10.4.044304
Affan, R.O and Scott B.B. (2022) Everything, everywhere, all at once: Functional specialization and distributed coding in the cerebral cortex. Neuron. https://doi.org/10.1016/j.neuron.2022.07.006
Scott, B.B., Velho, T.A., Sim, S. and Lois, C., (2010) Applications of avian transgenesis. ILAR journal, 51(4), pp.353-361. https://doi.org/10.1093/ilar.51.4.353
Scott, B.B. and Sanjana, N.E., (2009) The Wanderlust of Newborn Neocortical Interneurons. Journal of Neuroscience, 29(22), pp.7114-7115. https://doi.org/10.1523/JNEUROSCI.1624-09.2009
Chen, J., Chen, S.C.Y., Stern, P., Scott, B.B. and Lois, C. (2008) Genetic strategy to prevent influenza virus infections in animals. The Journal of infectious diseases, 197(Supplement_1), pp.S25-S28. https://doi.org/10.1086/524987
Scott, B.B. and Lois, C. (2006) Production of transgenic birds using lentiviral vectors. In Mammalian and Avian Transgenesis—New Approaches (pp. 221-230). Berlin, Heidelberg: Springer Berlin Heidelberg.